Publications and Presentations

Refereed Journal Publications

  1. Kenneth Daily, Paul Rigor, Scott Christley, Xiaohui Xie, Pierre Baldi. "Data Structures and Compression Algorithms for High-Throughput Sequencing Technologies." BMC Bioinformatics, October 2010. PMCID: PMC2964686
  2. S. Joshua Swamidass, Chloe-Agathe Azencott, Kenneth Daily, Pierre Baldi. "A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval." Bioinformatics, May 2010. PMCID: PMC2865862.
  3. Kenneth Daily, Predrag Radivojac, A. Keith Dunker. "Intrinsic disorder and protein modifications: building an SVM predictor for methylation." IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2005, pp. 475-481, San Diego, California, U.S.A., November 2005. (PDF)

Publications in Preparation

  1. Kenneth Daily, Paul Rigor, Sholeh Forouzan, Yimeng Dou, Vishal Patel, Xiaohui Xie and Pierre Baldi. “Genome-wide maps of candidate regulatory motif sites.”
  2. Suzanne Sandmeyer, Kim Nguyen, Kenneth Daily, Xiaojie Qi, Paul Rigor, Sholeh Forouzan, Pierre Baldi. “Analysis of the Ty3 Retrotransposon in Saccharomyces cerevisiae Using Transposition Assays and High Throughput Sequencing Technologies.”
  3. W. Jacob B. Biesinger, Jane Cho, Kenneth Daily, Paul Rigor, Douglas Bornemann, Rahul Warrior, Pierre Baldi, Kavita Arora, and Xiaohui Xie. “A Map of Candidate Regulatory Motifs in Fly.”

Presentations and Posters

  1. "MotifMap: Genome-Wide Map of Regulatory Binding Sites." Poster, HTS to P4 Medicine Conference. UCI, Irvine, CA, February 2011. (PDF)
  2. "MotifMap: Genome-Wide Map of Regulatory Binding Sites." NLM Informatics Training Conference. Denver, CO, June 2010. (abstract, PDF)
  3. "Analysis of the Ty3 Retrotransposon in Saccharomyces cerevisiae Using Transposition Assays and High Throughput Sequencing Technologies." NLM Informatics Training Conference. Portland, OR, June 2009. (abstract, PDF)
  4. "Data Structures and Compression Algorithms for High-Throughput Sequencing." Poster. International Conference on Intelligent Systems for Molecular Biology. Stockholm, Sweden, June 2009. (abstract, PDF)